There’s a note on the Flathub page that it requires permission to your home folder, so this should be granted automatically. Maybe they made an update since you had the issue?
In most cases the sandboxing should not require user intervention. Apps can either use the native file picker (which gives them access to selected files) or list which directories they want to access in their manifest. If an app tells you to select a file by path-in-text-input or homemade file picker, but doesn’t have permission to the relevant directories, that’s a config issue on the packager’s side.




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